TURING Algorithms for Computation with Finite Dynamical Systems


LocalModelToWiringDiagram

This script takes as input a local model, formatted in one of the discretedynamics::localModelxxxxxxx.json formats, and calculates the wiring diagram (without checking for potentially fictious variables)

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SDDS

The SDDS module simulates the average trajectory for each variable out of numberofSimulations trajectories deterministically or stochastically. The input is a discrete dynamical system with functions given as polynomials. It also requires propensity parameters (between 0 and 1) as described in this paper: https://doi.org/10.1186/1687-4153-2012-5.

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