TURING Algorithms for Computation with Finite Dynamical Systems
This script takes as input a local model, formatted in one of the discretedynamics::localModelxxxxxxx.json formats, and calculates the wiring diagram (without checking for potentially fictious variables)
The SDDS module simulates the average trajectory for each variable out of numberofSimulations trajectories deterministically or stochastically.
The input is a discrete dynamical system with functions given as polynomials. It also requires propensity parameters (between 0 and 1) as described in this paper: https://doi.org/10.1186/1687-4153-2012-5.